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Dittmer Expression (applies formulas to images), HPGL Reader, Warp, OpenGL Example, PxM Reader (imports PBM, PGM and PPM), Pixellate, Seam Carving, Animated PNG (APNG) Writer Bob Dougherty Ellipse ROI, Live Histogram, Measure Stack, Multi Measure, NTSC DV2Float, QuickTime Grab, Layers, Stack Sorter, Measure ROI, Polynomial Fit, PLOT3D I/O, Polar Gradient, 3D Fast Hartley Transform (FHT, FFT), 2D and 3D Deconvolution, Diffraction PSF 3D 3D Local Thickness (3D Distance Map), MicroArray Profile, Label Image Jeff Hardin QuickTime Movie Player, Concatenate Movies, QT4D Player, QT4D Writer, Acquire4D, Rename Perkin-Elmer Files Per Christian Henden Orientation Measurement, Fractal Estimation, Susan Smoothing (2D&3D), Isolated Pixel Removal (2D&3D), Small Region Removal, Adaptive 3D Threshold, Semi Band-threshold, 3D Otsu Thresholding, 3D Discrete Distance Tranform, Extrude Map, Gaussian Noise Frederick Hessman Anaglyph, Astronomy Plugin Package, Directory Watcher, Figure Calibration, Image Padder, Paint by Number, RGB Composer, Telescope Tracking Package, SVD Analysis Gregory Jefferis Biorad Reader, BioRad Writer, Amira Reader Amira Writer, IGS Raw Reader (gzip) Gabriel Landini Convolution filters, game of life, contour lines , morphological operators, dilation, erosion, 4- and 8-connected particle analysis color thresholding, color deconvolution (stain separation) Mark Longair Simple Neurite Tracer, Three Pane Crop, Unpack To PNG, Quantile Based Normalization, Find Connected Regions, Mask Of Nearby Points, "Tubeness" (useful for tracing neurons or blood vessels) Peter Sebastian Masny ImageCanvasWithOverlay, Census (identify, count, and process objects), XYZ_MaxProject (max projection along all three axis) Tony Parker Dispose All Windows, Interfile Encoder/Decoder, Lookup Tables Align Stacks, Orthogonal Views (axial, coronal, and sagital) Sean Parsons FFT Box, Phase Space, ROI Group Manager and Tight Montage Stephan Preibisch Stitching, Gaussian Convolution, FFT 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Analyser, Stack Colocalisation Analyser, Threshold, Contrast Enhancer, GaussianFit Loader, Difference of Gaussians Image Differentials (gradient, Laplacian, and Hessian) Point Picker TurboReg (image registration [alignment]) Cubic Spline Resizing Segmenting Assistant NucMed Collection (PET/SPECT imaging) Jython, FFT, Lecture Notes (German) Install and use Jython with ImageJ Fractional Splines and Wavelets DICOM Import and Export (uses dcm4che library) Watershed Algorithm Extended Depth of Field (in focus images from 3D objects) Yawi3D (Yet Another Wand for ImageJ 3D) UnwarpJ (registration [alignment] using warping) Save in Biorad PIC format Find Colocalized Pixels in RGB Channels Measure Total Above Thresholded Area in a Stack StackReg (recursive alignment [registration] of stacks) 3D Deconvolution in Optical Microscopy PixFRET (FRET calculations) Power and log transforms, contrast stretching, spatial filtering SpotTracker (particle tracking over noisy image sequences) DStretch 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simulated DNA microarray images) SparkMaster (calcium spark analysis) Spectral Deconvolution (2D and 3D Tikhonov and TSVD deblurring) Iterative Deconvolution 2D (deblurring using MRNSD, CGLS or HyBR) HRRT Deconvolution (motion correction of PET brain images) MosaicJ (build a mosaic from overlapping partial images) OpenMIMS (Multi Isotope Mass Spectrometry) Image Stabilizer (stabilizes jittery stacks using Lucas-Kanade method) Multiple Stack Viewer (opens multiples stacks in a window) Mathematical Morphology (25 plugins that use structuring elements) MovieIO (library for reading and writing video files frame-by-frame) Turning CDMAM (moves the discs inside CDMAM phantoms) MR Urography (kidney assessment) AccPbFRET (analyze acceptor photobleaching FRET images) Volumest (volume estimation using stereological method) Delaunay_Voronoi (Delaunay/Voronoi diagrams from point selections) 3D Viewer (hardware-accelerated 3D volume and surface visualization) Scan Calculator (calculate 3D data from 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characterization) ActogramJ (analysis and visualization of chronobiological data) MouseMove (semi-automated analysis of movement in rodents) HyperStackReg (multi-channel hyperstack registration) DRIQ (QC measurements in radiography and mammography) MJ2 Opener (opens MJ2 files; requires Java 8 and Windows) SarcOptiM (high frequency online sarcomere length measurement) TTorg (transverse tubular system regularity analysis) NucleusJ (nuclear shape and chromatin organization) TANGO (high-throughput processing and analysis of 3D fluorescence images) SarConfoCal (Simultaneous Ca fluorescence and sarcomeres length from LSCM images) Barcode_Codec (1D/2D barcode encoder/decoder) QR Decoder for ImageJ (decodes QR barcodes) HoloJ (reconstruct and analyze phase and amplitude images from holograms) 2b1af7f3a8